Compute basic statistics from a GTF file,T10.gtf, also for the chr22.gtf
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کد پروژه: 73159
شرح پروژه
Compute basic statistics from a GTF file
GTF is a common file format for sharing storing genomic annotation
In this assignment you will have to write a program for calculating various statistics from a GTF file, including
Tot number of genes
Avg length of introns/exons
Avg number of introns/exons per gene
Avg number of alternative transcripts per gene Avg length of CDS, 5' and 3' UTR.
driving the same statistics as for T10.gtf aslo for chr22.gtf
The GTF (General Transfer Format), is a format used to provide genomic coordinates of gene features
Composed by 9 columns. But we will be working with only with 5:
1seqname- name of the chromosome
3feature - feature type name, e.g. Gene, CDS
UTR
4start - Start position of the feature
5end - End position of the feature
9attribute - A semicolon-separated list of tag-value pairs, providing additional information about each feature
do the same for T10.GTF and chr22.GTF
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100,000 تومان تا 300,000 تومان
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7روز
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