12641 - پروژه انفورماتیک...

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شرح پروژه

- من یک ایمیل از استاد دریافت کردم با یک سری منابع که باید بخونم و یاد بگیرم که بتونم پروژه انجام بدم  من این هارو براتون میفرستم فقط اینکه به انگلیسی هستند. مقاله در ضمیمه میباشد. توضیحات بیشتر در فایل صوتی ضمیمه میباشد. تعداد صفخان حداقل 50 باشه. مابقی داده ها براتون ارسال میشه. سوالی هست بپرسید. زبان ترجیحا جاوا. درس statical Data analys .

Here's a set of resources that I think would be useful for you, so that you have a context of what we are doing:

Newick Trees: https://evolution.genetics.washington.edu/phylip/newicktree.html

Phylogenetics in R: http://phytools.org/eqg/Exercise_3.2/

Phylogenetic reconstruction (read everything before the 'evolutionary simulations): https://github.com/applied-bioinformatics/An-Introduction-To-Applied-Bioinformatics/blob/master/book/fundamentals/phylogeny-reconstruction.md

https://en.wikipedia.org/wiki/Inferring_horizontal_gene_transfer

The attached document has the introduction and part of the methods section from Carolina's master thesis. She started this comparative study, and did multiple different analyses. You will do only one such analysis for your thesis (i.e. verifying if transferred gene inferences correlate with gene proximity). You don't need to understand everything that she did, because she did a Master thesis. But read at least the introduction to get a basic idea of why we are doing this comparative study and why it is important.

I could give you books to read, but I think you don't need to know a lot of bioinformatics/phylogenetics to work in this project. your project is mostly programming and statistical analysis. When you don't understand a specific topic, learn that specific topic and everything that it depends on.

این پروژه شامل 2 فایل مهم است، لطفا قبل از ارسال پیشنهاد حتما نسبت به بررسی این فایل اقدام فرمایید.

مهارت ها و تخصص های مورد نیاز

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